If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ), 'gf_id' => 'HOM05D000722', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000722' ), 'data_identifier' => 'HOM05D000722', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000722', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '801', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00150' => 'bna', 'A02p31710' => 'bna', 'A03p01340' => 'bna', 'A04p06570' => 'bna', 'A04p16100' => 'bna', 'A04p27990' => 'bna', 'A04p28000' => 'bna', 'A06p48780' => 'bna', 'A07p21320' => 'bna', 'A08p23910' => 'bna', 'A09p45990' => 'bna', 'A10p32410' => 'bna', 'Aa31LG10G8130' => 'aar', 'Aa31LG2G8740' => 'aar', 'Aa31LG3G2500' => 'aar', 'Aa31LG5G11880' => 'aar', 'Aa31LG5G21640' => 'aar', 'Aa31LG5G21650' => 'aar', 'Aa31LG6G16280' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3521' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3699' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.414' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2425' => 'aag', 'Actinidia00839' => 'ach', 'Actinidia03658' => 'ach', 'Actinidia05453' => 'ach', 'Actinidia06686' => 'ach', 'Actinidia08432' => 'ach', 'Actinidia10399' => 'ach', 'Actinidia14934' => 'ach', 'Actinidia20470' => 'ach', 'Actinidia25371' => 'ach', 'Actinidia31287' => 'ach', 'Actinidia31993' => 'ach', 'Actinidia32454' => 'ach', 'Actinidia33631' => 'ach', 'Actinidia37389' => 'ach', 'Ah.01g006400' => 'amhyb', 'Ah.01g018860' => 'amhyb', 'Ah.03g141590' => 'amhyb', 'Ah.08g210900' => 'amhyb', 'Ah.15g091070' => 'amhyb', 'AL4G10470' => 'aly', 'AL4G32640' => 'aly', 'AL5G10090' => 'aly', 'AL5G33720' => 'aly', 'AL6G13200' => 'aly', 'AL7G10870' => 'aly', 'AL7G26380' => 'aly', 'AL7G26400' => 'aly', 'Aqoxy327s001' => 'aox', 'Aqoxy3G00175' => 'aox', 'Aqoxy4G02310' => 'aox', 'Aqoxy4G02883' => 'aox', 'Aqoxy5G01481' => 'aox', 'Aqoxy6G02378' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7JNS89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7XC003' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C9QL2M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK49XX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5ZE2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KGCE0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5GRW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LK110R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LML9QV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LMZT46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P96X61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S70RIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SFW5N9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5PE0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU2VWU' => 'arhy', 'AT2G01140' => 'ath', 'AT2G21330' => 'ath', 'AT2G36460' => 'ath', 'AT3G52930' => 'ath', 'AT4G26520' => 'ath', 'AT4G26530' => 'ath', 'AT4G38970' => 'ath', 'AT5G03690' => 'ath', 'ATR0584G023' => 'atr', 'ATR0661G190' => 'atr', 'ATR0751G049' => 'atr', 'ATR0820G121' => 'atr', 'Atru.chr11.325' => 'acertr', 'Atru.chr2.3754' => 'acertr', 'Atru.chr2.3765' => 'acertr', 'Atru.chr2.3768' => 'acertr', 'Atru.chr2.3770' => 'acertr', 'Atru.chr2.3774' => 'acertr', 'Atru.chr8.1627' => 'acertr', 'Atru.ctg942.8' => 'acertr', 'AUR62000564' => 'cqu', 'AUR62006918' => 'cqu', 'AUR62010395' => 'cqu', 'AUR62016823' => 'cqu', 'AUR62028580' => 'cqu', 'AUR62033531' => 'cqu', 'AUR62033562' => 'cqu', 'AUR62035644' => 'cqu', 'AUR62041432' => 'cqu', 'AUR62044102' => 'cqu', 'BcaB01g00327' => 'bca', 'BcaB01g05806' => 'bca', 'BcaB03g12235' => 'bca', 'BcaB06g28944' => 'bca', 'BcaB06g28945' => 'bca', 'BcaB06g28946' => 'bca', 'BcaB06g28947' => 'bca', 'BcaB07g30422' => 'bca', 'BcaB08g34984' => 'bca', 'BcaC01g00268' => 'bca', 'BcaC02g07589' => 'bca', 'BcaC02g07590' => 'bca', 'BcaC02g08797' => 'bca', 'BcaC02g09202' => 'bca', 'BcaC03g17000' => 'bca', 'BcaC06g32078' => 'bca', 'BcaC07g39656' => 'bca', 'BcaC07g41155' => 'bca', 'BcaC08g44610' => 'bca', 'BcaC09g50719' => 'bca', 'BcaNung01291' => 'bca', 'BcaNung01949' => 'bca', 'BcaNung02406' => 'bca', 'BcaNung06937' => 'bca', 'BolC1t00026H' => 'bol', 'BolC2t10999H' => 'bol', 'BolC2t11929H' => 'bol', 'BolC3t19999H' => 'bol', 'BolC4t25574H' => 'bol', 'BolC4t26654H' => 'bol', 'BolC4t28028H' => 'bol', 'BolC4t28029H' => 'bol', 'BolC6t37266H' => 'bol', 'BolC7t46756H' => 'bol', 'BolC8t50431H' => 'bol', 'BolC8t51724H' => 'bol', 'BolC9t60058H' => 'bol', 'BraA01t00021Z' => 'bra', 'BraA01t01734Z' => 'bra', 'BraA02t08180Z' => 'bra', 'BraA04t16361Z' => 'bra', 'BraA04t17250Z' => 'bra', 'BraA04t18287Z' => 'bra', 'BraA04t18288Z' => 'bra', 'BraA06t27745Z' => 'bra', 'BraA07t29819Z' => 'bra', 'BraA08t34349Z' => 'bra', 'BraA09t40062Z' => 'bra', 'BraA09t41220Z' => 'bra', 'BraA10t45281Z' => 'bra', 'C01p00210' => 'bna', 'C02p49090' => 'bna', 'C03p77440' => 'bna', 'C04p40010' => 'bna', 'C04p50560' => 'bna', 'C04p65400' => 'bna', 'C04p65410' => 'bna', 'C06p20810' => 'bna', 'C07p63440' => 'bna', 'C08p28180' => 'bna', 'C08p41620' => 'bna', 'C09p73230' => 'bna', 'CAN.G1138.19' => 'can', 'CAN.G1489.20' => 'can', 'CAN.G1505.14' => 'can', 'CAN.G170.97' => 'can', 'CAN.G623.44' => 'can', 'CAN.G693.5' => 'can', 'CAN.G824.11' => 'can', 'CAN.G95.3' => 'can', 'CANSAT01G3023' => 'cansat', 'CANSAT11G0175' => 'cansat', 'CANSAT11G0725' => 'cansat', 'CANSAT80G0050' => 'cansat', 'CANSAT80G1794' => 'cansat', 'CARHR112210' => 'chi', 'CARHR130760' => 'chi', 'CARHR143690' => 'chi', 'CARHR162810' => 'chi', 'CARHR209610' => 'chi', 'CARHR234110' => 'chi', 'CARHR247800' => 'chi', 'Carub.0004s0037' => 'cru', 'Carub.0004s1827' => 'cru', 'Carub.0005s0012' => 'cru', 'Carub.0005s1941' => 'cru', 'Carub.0006s0260' => 'cru', 'Carub.0007s0079' => 'cru', 'Carub.0007s1435' => 'cru', 'Carub.0007s1436' => 'cru', 'Ca_08968_v3' => 'car', 'Ca_11119_v3' => 'car', 'Ca_11636_v3' => 'car', 'Ca_19980_v3' => 'car', 'Ca_20925_v3' => 'car', 'Ca_20932_v3' => 'car', 'Ca_20933_v3' => 'car', 'Ca_31072_v3' => 'car', 'CBR_g31765' => 'cbr', 'CBR_g31769' => 'cbr', 'CBR_g31771' => 'cbr', 'CBR_g31776' => 'cbr', 'CBR_g32043' => 'cbr', 'CBR_g32047' => 'cbr', 'CBR_g32048' => 'cbr', 'CBR_g32626' => 'cbr', 'CBR_g32629' => 'cbr', 'CBR_g32630' => 'cbr', 'CBR_g32632' => 'cbr', 'CBR_g32635' => 'cbr', 'CBR_g32656' => 'cbr', 'CBR_g36331' => 'cbr', 'CBR_g38009' => 'cbr', 'CBR_g4162' => 'cbr', 'CBR_g51787' => 'cbr', 'Cc02_g16950' => 'ccan', 'Cc05_g15430' => 'ccan', 'Cc06_g05320' => 'ccan', 'Cc07_g10450' => 'ccan', 'Cc09_g08630' => 'ccan', 'Cc11_g09330' => 'ccan', 'CDE02G3649' => 'cde', 'CDE04G0366' => 'cde', 'CDE04G1552' => 'cde', 'CDE04G2093' => 'cde', 'CDE04G2927' => 'cde', 'CDE05G1438' => 'cde', 'CDE05G1750' => 'cde', 'CDE05G1768' => 'cde', 'CDE06G0659' => 'cde', 'Cfa005100' => 'cfa', 'Cfa015820' => 'cfa', 'Cfa016538' => 'cfa', 'Ciclev10008762m.g' => 'ccl', 'Ciclev10012049m.g' => 'ccl', 'Ciclev10017877m.g' => 'ccl', 'Ciclev10028594m.g' => 'ccl', 'CiPaw.05G244600' => 'cil', 'CiPaw.06G128300' => 'cil', 'CiPaw.09G009100' => 'cil', 'CiPaw.10G005800' => 'cil', 'CiPaw.12G141300' => 'cil', 'ClCG01G005990' => 'cla', 'ClCG04G009790' => 'cla', 'ClCG10G019280' => 'cla', 'ClCG11G003870' => 'cla', 'COL.COLO4_07752' => 'col', 'COL.COLO4_21957' => 'col', 'COL.COLO4_26041' => 'col', 'COL.COLO4_29810' => 'col', 'Cpa.g.sc119.50' => 'cpa', 'Cpa.g.sc12.98' => 'cpa', 'Cpa.g.sc6.217' => 'cpa', 'Cpa.g.sc65.85' => 'cpa', 'Cre01.g006950' => 'cre', 'Cre02.g093450' => 'cre', 'Cre02.g115650' => 'cre', 'Cre05.g234550' => 'cre', 'CsaV3_2G015280' => 'csa', 'CsaV3_3G036910' => 'csa', 'CsaV3_5G028690' => 'csa', 'CsaV3_6G040430' => 'csa', 'CsaV3_7G021470' => 'csa', 'CSS0007205' => 'camsi', 'CSS0012679' => 'camsi', 'CSS0024901' => 'camsi', 'CSS0028383' => 'camsi', 'CSS0031505' => 'camsi', 'CSS0031899' => 'camsi', 'CSS0036693' => 'camsi', 'CSS0037862' => 'camsi', 'CSS0037988' => 'camsi', 'CSS0038080' => 'camsi', 'DCAR_003683' => 'dca', 'DCAR_007274' => 'dca', 'DCAR_009184' => 'dca', 'DCAR_013363' => 'dca', 'DCAR_020776' => 'dca', 'DCAR_022915' => 'dca', 'DCAR_025991' => 'dca', 'DCAR_030182' => 'dca', 'Dinv04912' => 'din', 'Dinv10368' => 'din', 'Dinv15449' => 'din', 'Dinv16158' => 'din', 'Dinv19833' => 'din', 'Dinv21249' => 'din', 'Dinv23457' => 'din', 'Dinv42002' => 'din', 'Duzib052G0883' => 'dzi', 'Duzib093G1693' => 'dzi', 'Duzib106G1208' => 'dzi', 'Duzib128G1509' => 'dzi', 'Duzib132G0051' => 'dzi', 'Duzib187G1347' => 'dzi', 'Duzib213G0378' => 'dzi', 'Duzib248G1278' => 'dzi', 'Duzib264G0137' => 'dzi', 'Duzib268G0523' => 'dzi', 'ECA234G0041' => 'eca', 'ECA236G4181' => 'eca', 'ECA238G3543' => 'eca', 'ECA238G4460' => 'eca', 'ECA246G4394' => 'eca', 'ECA248G1026' => 'eca', 'EL10Ac4g09682' => 'bvu', 'EL10Ac7g16957' => 'bvu', 'EL10Ac7g16983' => 'bvu', 'EL10Ac9g21643' => 'bvu', 'EL10As8g23846' => 'bvu', 'Eucgr.A01538' => 'egr', 'Eucgr.B02864' => 'egr', 'Eucgr.B03891' => 'egr', 'Eucgr.F02017' => 'egr', 'Eucgr.G01726' => 'egr', 'Eucgr.I01326' => 'egr', 'Eucgr.K02073' => 'egr', 'FAN02G2264' => 'fan', 'FAN05G1334' => 'fan', 'FAN05G2304' => 'fan', 'FAN05G4384' => 'fan', 'FAN07G0469' => 'fan', 'FAN09G1494' => 'fan', 'FAN11G1641' => 'fan', 'FAN12G3220' => 'fan', 'FAN12G3478' => 'fan', 'FAN14G2704' => 'fan', 'FAN15G0678' => 'fan', 'FAN16G0314' => 'fan', 'FAN17G3112' => 'fan', 'FAN20G0866' => 'fan', 'FAN21G1355' => 'fan', 'FAN22G1155' => 'fan', 'FAN24G0697' => 'fan', 'FAN27G1934' => 'fan', 'FvH4_2g10390' => 'fve', 'FvH4_3g42150' => 'fve', 'FvH4_4g06130' => 'fve', 'FvH4_4g26450' => 'fve', 'FvH4_6g17980' => 'fve', 'Glyma.02G222400' => 'gma', 'Glyma.02G303000' => 'gma', 'Glyma.03G191500' => 'gma', 'Glyma.04G008300' => 'gma', 'Glyma.10G066700' => 'gma', 'Glyma.10G268500' => 'gma', 'Glyma.11G111100' => 'gma', 'Glyma.11G111400' => 'gma', 'Glyma.12G037400' => 'gma', 'Glyma.12G153001' => 'gma', 'Glyma.13G151800' => 'gma', 'Glyma.14G010900' => 'gma', 'Glyma.14G189400' => 'gma', 'Glyma.20G122500' => 'gma', 'Gohir.A01G208900' => 'ghi', 'Gohir.A04G065600' => 'ghi', 'Gohir.A04G065642' => 'ghi', 'Gohir.A05G317700' => 'ghi', 'Gohir.A12G061000' => 'ghi', 'Gohir.A13G030400' => 'ghi', 'Gohir.A13G030500' => 'ghi', 'Gohir.A13G130300' => 'ghi', 'Gohir.D01G197900' => 'ghi', 'Gohir.D04G103800' => 'ghi', 'Gohir.D04G104000' => 'ghi', 'Gohir.D05G319600' => 'ghi', 'Gohir.D12G061100' => 'ghi', 'Gohir.D13G028400' => 'ghi', 'Gohir.D13G028500' => 'ghi', 'Gohir.D13G133600' => 'ghi', 'Gorai.002G242100' => 'gra', 'Gorai.008G064200' => 'gra', 'Gorai.009G342900' => 'gra', 'Gorai.009G407400' => 'gra', 'Gorai.009G407500' => 'gra', 'Gorai.013G032400' => 'gra', 'Gorai.013G032500' => 'gra', 'Gorai.013G150000' => 'gra', 'GSVIVG01011810001' => 'vvi', 'GSVIVG01014837001' => 'vvi', 'GSVIVG01018820001' => 'vvi', 'GSVIVG01024174001' => 'vvi', 'GSVIVG01033791001' => 'vvi', 'HanXRQChr01g0028911' => 'han', 'HanXRQChr13g0402651' => 'han', 'HanXRQChr13g0414711' => 'han', 'HanXRQChr14g0432581' => 'han', 'HanXRQChr14g0441641' => 'han', 'HanXRQChr15g0482861' => 'han', 'HanXRQChr15g0482871' => 'han', 'HanXRQChr15g0488011' => 'han', 'HanXRQChr16g0529531' => 'han', 'HanXRQChr16g0531101' => 'han', 'HanXRQChr17g0549641' => 'han', 'HanXRQChr17g0567101' => 'han', 'Haze_00676' => 'cav', 'Haze_02251' => 'cav', 'Haze_02259' => 'cav', 'Haze_19543' => 'cav', 'Haze_26475' => 'cav', 'Hma1.2p1_0024F.1_g015980' => 'hma', 'Hma1.2p1_0066F.1_g035790' => 'hma', 'Hma1.2p1_0084F.1_g043310' => 'hma', 'Hma1.2p1_0114F.1_g055520' => 'hma', 'Hma1.2p1_0208F.1_g088290' => 'hma', 'Hma1.2p1_0321F.1_g124000' => 'hma', 'Hma1.2p1_0611F.1_g188680' => 'hma', 'Hma1.2p1_0851F.1_g228190' => 'hma', 'Hma1.2p1_1158F.1_g262390' => 'hma', 'Hma1.2p1_1244F.1_g270020' => 'hma', 'Hma1.2p1_1985F.1_g310060' => 'hma', 'HPP92_002060' => 'vpl', 'HPP92_019372' => 'vpl', 'HPP92_027364' => 'vpl', 'Hund00216' => 'sun', 'Hund07202' => 'sun', 'Hund19280' => 'sun', 'Hund19968' => 'sun', 'Lalb_Chr01g0002151' => 'lal', 'Lalb_Chr02g0145671' => 'lal', 'Lalb_Chr03g0025361' => 'lal', 'Lalb_Chr04g0252501' => 'lal', 'Lalb_Chr06g0165771' => 'lal', 'Lalb_Chr06g0173341' => 'lal', 'Lalb_Chr10g0107531' => 'lal', 'Lalb_Chr17g0344841' => 'lal', 'Lalb_Chr19g0138941' => 'lal', 'Lalb_Chr19g0138951' => 'lal', 'Lalb_Chr20g0112181' => 'lal', 'Lalb_Chr21g0315641' => 'lal', 'Lalb_Chr25g0288631' => 'lal', 'Lj2P130T18' => 'lonja', 'Lj3g0018814' => 'lja', 'Lj3P1002T47' => 'lonja', 'Lj4C215T7' => 'lonja', 'Lj4g0005414' => 'lja', 'Lj5C190T17' => 'lonja', 'Lj5g0004560' => 'lja', 'Lj5g0013092' => 'lja', 'Lj6C751T13' => 'lonja', 'Lj8C181T4' => 'lonja', 'Lj9C383T1' => 'lonja', 'LjContig00081g0007279' => 'lja', 'LjContig00155g0018436' => 'lja', 'Lsat_1_v5_gn_1_50200' => 'lsa', 'Lsat_1_v5_gn_2_21280' => 'lsa', 'Lsat_1_v5_gn_2_78480' => 'lsa', 'Lsat_1_v5_gn_4_15680' => 'lsa', 'Lsat_1_v5_gn_6_70881' => 'lsa', 'Lsat_1_v5_gn_7_116520' => 'lsa', 'Lsat_1_v5_gn_8_41941' => 'lsa', 'Manes.01G004600' => 'mes', 'Manes.01G143100' => 'mes', 'Manes.02G101600' => 'mes', 'Manes.04G007900' => 'mes', 'Manes.04G083800' => 'mes', 'Manes.05G202700' => 'mes', 'Manes.06G063500' => 'mes', 'Manes.07G000100' => 'mes', 'Manes.08G021400' => 'mes', 'Manes.11G158000' => 'mes', 'Manes.14G108900' => 'mes', 'Mapoly0031s0128' => 'mpo', 'Mapoly0052s0049' => 'mpo', 'Mapoly0053s0082' => 'mpo', 'Mapoly0130s0033' => 'mpo', 'MBI01_g03734_MAGBIO' => 'mbi', 'MBI10_g06743_MAGBIO' => 'mbi', 'MBI14_g29298_MAGBIO' => 'mbi', 'MBI17_g10825_MAGBIO' => 'mbi', 'MCO01G536' => 'mco', 'MCO01G665' => 'mco', 'MCO13G270' => 'mco', 'MD00G1040000' => 'mdo', 'MD03G1037700' => 'mdo', 'MD03G1135800' => 'mdo', 'MD04G1053200' => 'mdo', 'MD10G1063600' => 'mdo', 'MD11G1038900' => 'mdo', 'MD11G1158300' => 'mdo', 'MD12G1018700' => 'mdo', 'MD12G1018800' => 'mdo', 'MD13G1033400' => 'mdo', 'MD14G1016700' => 'mdo', 'MD14G1016800' => 'mdo', 'MD16G1035200' => 'mdo', 'MD16G1096800' => 'mdo', 'MD17G1158400' => 'mdo', 'Medtr1g061050' => 'mtr', 'Medtr1g109200' => 'mtr', 'Medtr4g057670' => 'mtr', 'Medtr4g071860' => 'mtr', 'Medtr4g071880' => 'mtr', 'Medtr5g069050' => 'mtr', 'Medtr5g069055' => 'mtr', 'Medtr5g096670' => 'mtr', 'Medtr7g103920' => 'mtr', 'MELO3C005333.2' => 'cme', 'MELO3C009438.2' => 'cme', 'MELO3C013203.2' => 'cme', 'MELO3C023354.2' => 'cme', 'MELO3C024519.2' => 'cme', 'Migut.B00177' => 'egut', 'Migut.E00387' => 'egut', 'Migut.H02479' => 'egut', 'Migut.L01014' => 'egut', 'Migut.L01757' => 'egut', 'Migut.M01618' => 'egut', 'MSTRG.10352' => 'ama', 'MSTRG.13562' => 'ama', 'MSTRG.15816' => 'ama', 'MSTRG.19233' => 'ama', 'MSTRG.20042' => 'ama', 'MSTRG.2204' => 'ama', 'MSTRG.3826' => 'ama', 'MSTRG.5422' => 'ama', 'MSTRG.5811' => 'ama', 'Nitab4.5_0000132g0160' => 'nta', 'Nitab4.5_0000136g0100' => 'nta', 'Nitab4.5_0000350g0050' => 'nta', 'Nitab4.5_0001317g0050' => 'nta', 'Nitab4.5_0001969g0060' => 'nta', 'Nitab4.5_0003886g0050' => 'nta', 'Nitab4.5_0004567g0060' => 'nta', 'Nitab4.5_0005294g0010' => 'nta', 'Nitab4.5_0005517g0020' => 'nta', 'Nitab4.5_0006358g0030' => 'nta', 'Nitab4.5_0010630g0020' => 'nta', 'Nitab4.5_0012115g0030' => 'nta', 'Nitab4.5_0012660g0010' => 'nta', 'Nitab4.5_0012714g0020' => 'nta', 'Nitab4.5_0017990g0020' => 'nta', 'Nn1g07585' => 'nnu', 'Nn1g07715' => 'nnu', 'Nn2g14016' => 'nnu', 'Nn3g17994' => 'nnu', 'Nn4g24015' => 'nnu', 'Nn5g29226' => 'nnu', 'Nn6g32247' => 'nnu', 'Nn6g35032' => 'nnu', 'Oeu018720.1' => 'oeu', 'Oeu019696.1' => 'oeu', 'Oeu020705.1' => 'oeu', 'Oeu026628.1' => 'oeu', 'Oeu031394.1' => 'oeu', 'Oeu031395.1' => 'oeu', 'Oeu032420.1' => 'oeu', 'Oeu039824.1' => 'oeu', 'Oeu040532.1' => 'oeu', 'Oeu040533.2' => 'oeu', 'Oeu046134.1' => 'oeu', 'Oeu052897.1' => 'oeu', 'Oeu055634.1' => 'oeu', 'Oeu059512.2' => 'oeu', 'Os01g0118000' => 'osa', 'Os01g0905800' => 'osa', 'Os05g0402700' => 'osa', 'Os06g0608700' => 'osa', 'Os08g0120600' => 'osa', 'Os10g0163340' => 'osa', 'Os11g0171300' => 'osa', 'Os12g0169600' => 'osa', 'Peaxi162Scf00016g00148' => 'pax', 'Peaxi162Scf00068g01810' => 'pax', 'Peaxi162Scf00083g01223' => 'pax', 'Peaxi162Scf00110g02021' => 'pax', 'Peaxi162Scf00205g01128' => 'pax', 'Peaxi162Scf00232g00116' => 'pax', 'Peaxi162Scf00538g00233' => 'pax', 'Peaxi162Scf00538g00234' => 'pax', 'Peaxi162Scf00799g00005' => 'pax', 'PGR004G1000' => 'pgr', 'PGR042G3924' => 'pgr', 'PGR083G1702' => 'pgr', 'PGR102G2070' => 'pgr', 'PGR119G0795' => 'pgr', 'PGR142G2569' => 'pgr', 'PGSC0003DMG400002675' => 'stu', 'PGSC0003DMG400003123' => 'stu', 'PGSC0003DMG400003548' => 'stu', 'PGSC0003DMG400012012' => 'stu', 'PGSC0003DMG400022263' => 'stu', 'PGSC0003DMG400028261' => 'stu', 'PGSC0003DMG400030565' => 'stu', 'Phvul.007G033800' => 'pvu', 'Phvul.007G222900' => 'pvu', 'Phvul.008G189200' => 'pvu', 'Phvul.008G282000' => 'pvu', 'Phvul.009G003100' => 'pvu', 'Phvul.011G039100' => 'pvu', 'Potri.001G468100' => 'ptr', 'Potri.004G162400' => 'ptr', 'Potri.006G165700' => 'ptr', 'Potri.007G015500' => 'ptr', 'Potri.008G125900' => 'ptr', 'Potri.009G124100' => 'ptr', 'Potri.010G117900' => 'ptr', 'Potri.011G165000' => 'ptr', 'Potri.018G090100' => 'ptr', 'Pp3c11_2090' => 'ppa', 'Pp3c15_14720' => 'ppa', 'Pp3c18_18400' => 'ppa', 'Pp3c1_29630' => 'ppa', 'Pp3c1_29650' => 'ppa', 'Pp3c21_9980' => 'ppa', 'Pp3c25_9350' => 'ppa', 'Pp3c2_17700' => 'ppa', 'Pp3c2_35809' => 'ppa', 'Pp3c9_18680' => 'ppa', 'PRCOL_00000120' => 'pco', 'PRCOL_00004184' => 'pco', 'PRCOL_00005121' => 'pco', 'Prupe.1G319500' => 'ppe', 'Prupe.6G029500' => 'ppe', 'Prupe.6G120100' => 'ppe', 'Prupe.7G116500' => 'ppe', 'Prupe.7G116600' => 'ppe', 'Prupe.7G165400' => 'ppe', 'Prupe.8G085100' => 'ppe', 'Psat0s1258g0040' => 'psa', 'Psat2g005800' => 'psa', 'Psat6g079280' => 'psa', 'Psat6g223200' => 'psa', 'Psat7g139080' => 'psa', 'Psat7g139120' => 'psa', 'Psat7g168120' => 'psa', 'Psat7g168200' => 'psa', 'PSO170G3192' => 'pso', 'PSO210G0147' => 'pso', 'PSO210G0439' => 'pso', 'PSO210G6411' => 'pso', 'PSO339G4234' => 'pso', 'PSO384G1528' => 'pso', 'PSO384G4792' => 'pso', 'PSO384G5077' => 'pso', 'PSO443G0041' => 'pso', 'QL01p003117' => 'qlo', 'QL07p040292' => 'qlo', 'QL07p040410' => 'qlo', 'QL08p002528' => 'qlo', 'QL11p046373' => 'qlo', 'RcHm_v2.0_Chr3g0472251' => 'rch', 'RcHm_v2.0_Chr3g0472261' => 'rch', 'RcHm_v2.0_Chr4g0434081' => 'rch', 'RcHm_v2.0_Chr5g0075371' => 'rch', 'RcHm_v2.0_Chr6g0267861' => 'rch', 'Rhsim04G0009800' => 'rsi', 'Rhsim04G0044200' => 'rsi', 'Rhsim04G0135600' => 'rsi', 'Rhsim11G0183800' => 'rsi', 'Rhsim12G0087800' => 'rsi', 'Rhsim12G0087900' => 'rsi', 'Sabra04G0109100' => 'sbr', 'Sabra06G0127500' => 'sbr', 'Sabra08G0094900' => 'sbr', 'Sabra09G0095300' => 'sbr', 'Sabra10G0088800' => 'sbr', 'Sabra11G0140400' => 'sbr', 'Sabra16G0317400' => 'sbr', 'Sabra18G0077600' => 'sbr', 'SalBow3G4193' => 'sbo', 'SalBow5G1178' => 'sbo', 'SalBow8G0690' => 'sbo', 'SalBow8G2970' => 'sbo', 'SalBow8G5275' => 'sbo', 'Sc02g0001120' => 'sci', 'Sc14g0007260' => 'sci', 'Sc16g0002360' => 'sci', 'Sc20g0000130' => 'sci', 'Sc20g0006090' => 'sci', 'Sed0002284' => 'sed', 'Sed0004562' => 'sed', 'Sed0005518' => 'sed', 'Sed0006071' => 'sed', 'Sed0008057' => 'sed', 'Sed0010992' => 'sed', 'Sed0012759' => 'sed', 'Sed0025478' => 'sed', 'SEGI_02147' => 'sgi', 'SEGI_11929' => 'sgi', 'SEGI_17991' => 'sgi', 'SEGI_40439' => 'sgi', 'SGA_v2.0_scaffold184G39930' => 'sas', 'SGA_v2.0_scaffold32G13222' => 'sas', 'SGA_v2.0_scaffold32G13226' => 'sas', 'SGA_v2.0_scaffold40G15391' => 'sas', 'SGA_v2.0_scaffold50G18547' => 'sas', 'SGA_v2.0_scaffold75G24794' => 'sas', 'SGA_v2.0_scaffold7G03528' => 'sas', 'SHI16235' => 'shi', 'SHI23915' => 'shi', 'SMO115G0343' => 'smo', 'SMO117G0074' => 'smo', 'SMO119G0275' => 'smo', 'Solyc01g110360.3' => 'sly', 'Solyc02g062340.3' => 'sly', 'Solyc02g084440.4' => 'sly', 'Solyc05g008600.3' => 'sly', 'Solyc07g065900.3' => 'sly', 'Solyc09g009260.3' => 'sly', 'Solyc10g054340.1' => 'sly', 'Solyc10g054380.3' => 'sly', 'Solyc10g054390.3' => 'sly', 'Solyc10g083570.3' => 'sly', 'Sopen01g052510' => 'spe', 'Sopen02g013330' => 'spe', 'Sopen02g029140' => 'spe', 'Sopen05g004440' => 'spe', 'Sopen07g034090' => 'spe', 'Sopen09g003990' => 'spe', 'Sopen10g024250' => 'spe', 'Sopen10g033050' => 'spe', 'Sp2g12610' => 'spa', 'Sp4g00510' => 'spa', 'Sp4g18760' => 'spa', 'Sp5g09400' => 'spa', 'Sp6g39030' => 'spa', 'Sp7g24480' => 'spa', 'Sp7g36870' => 'spa', 'TAR029G0004' => 'tar', 'TAR369G0288' => 'tar', 'TAR371G0153' => 'tar', 'TAR374G0684' => 'tar', 'TAR375G0131' => 'tar', 'TAR381G0110' => 'tar', 'TAR381G1736' => 'tar', 'TAR622G0155' => 'tar', 'TAR623G1409' => 'tar', 'TAR623G1443' => 'tar', 'TAR625G0354' => 'tar', 'TAR628G0765' => 'tar', 'TAR633G0262' => 'tar', 'TAR636G0611' => 'tar', 'TAR636G2902' => 'tar', 'THA.LOC104804115' => 'tha', 'THA.LOC104805054' => 'tha', 'THA.LOC104807769' => 'tha', 'THA.LOC104816369' => 'tha', 'THA.LOC104817719' => 'tha', 'THA.LOC104823226' => 'tha', 'THA.LOC104823466' => 'tha', 'THA.LOC104824793' => 'tha', 'THA.LOC104827479' => 'tha', 'Thecc.01G022700' => 'tca', 'Thecc.02G075500' => 'tca', 'Thecc.02G214600' => 'tca', 'Thecc.05G081600' => 'tca', 'Thecc.07G006800' => 'tca', 'Thhalv10000191m.g' => 'esa', 'Thhalv10000915m.g' => 'esa', 'Thhalv10010492m.g' => 'esa', 'Thhalv10013921m.g' => 'esa', 'Thhalv10016856m.g' => 'esa', 'Thhalv10025379m.g' => 'esa', 'Thhalv10025556m.g' => 'esa', 'TPR.G10253' => 'tpr', 'TPR.G16226' => 'tpr', 'TPR.G16228' => 'tpr', 'TPR.G4846' => 'tpr', 'TPR.G5665' => 'tpr', 'TPR.G5812' => 'tpr', 'TWI31G0507' => 'twi', 'TWI31G0835' => 'twi', 'TWI39G0583' => 'twi', 'TWI53G0366' => 'twi', 'TWI74G0844' => 'twi', 'TWI75G1544' => 'twi', 'TWI77G0149' => 'twi', 'TWI79G0998' => 'twi', 'TWI79G1310' => 'twi', 'unitig_26.g9243' => 'ugi', 'unitig_32.g10685' => 'ugi', 'unitig_749.g14289' => 'ugi', 'unitig_8.g3987' => 'ugi', 'unitig_8.g4724' => 'ugi', 'unitig_85.g27357' => 'ugi', 'unitig_88.g27747' => 'ugi', 'unitig_899.g15209' => 'ugi', 'vmacro01420' => 'vma', 'vmacro02051' => 'vma', 'vmacro08817' => 'vma', 'vmacro09613' => 'vma', 'VMungo0647G1853' => 'vmu', 'VMungo0647G2023' => 'vmu', 'VMungo0720G0897' => 'vmu', 'VMungo0720G2713' => 'vmu', 'VMungo1127G1349' => 'vmu', 'VMungo1309G1837' => 'vmu', 'VMungo1383G1583' => 'vmu', 'Zm00001eb010390' => 'zma', 'Zm00001eb085480' => 'zma', 'Zm00001eb126080' => 'zma', 'Zm00001eb144240' => 'zma', 'Zm00001eb171950' => 'zma', 'Zm00001eb188850' => 'zma', 'Zm00001eb200910' => 'zma', 'Zm00001eb334740' => 'zma', 'Zm00001eb365200' => 'zma', 'Zm00001eb386660' => 'zma', 'Zm00001eb408010' => 'zma' ) $gf_id = 'HOM05D000722' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000722' ) $data_identifier = 'HOM05D000722' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 6, 'arhy' => (int) 15, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 17, 'ccan' => (int) 6, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 11, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 13, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 4, 'mbi' => (int) 4, 'mco' => (int) 3, 'mdo' => (int) 15, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 8, 'oeu' => (int) 14, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 10, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408010' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1